Joint profiling of chromatin accessibility and gene expression in thousands of single cells
Here we describe sci-CAR, a combinatorial indexing strategy to jointly profile chromatin accessibility and mRNA in each of thousands of single cells. As a proof-of-concept, we apply sci-CAR to 4,825 cells comprising a time-series of dexamethasone treatment, as well as to 11,233 cells from the mouse kidney.
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Atlas
Analysis Portals
NoneProject Label
JointProfilingChromatinAccessibilityGeneExpressionSpecies
Sample Type
Anatomical Entity
Organ Part
Unspecified
Selected Cell Types
Model Organ
Disease Status (Specimen)
Disease Status (Donor)
Development Stage
Library Construction Method
Nucleic Acid Source
single nucleus
Paired End
false, trueFile Format
Cell Count Estimate
16.1kDonor Count
5