HCA Data Explorer

Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma

Access Granted
Updated September 5, 2024

Advanced metastatic cancer poses utmost clinical challenges and may present molecular and cellular features distinct from an early-stage cancer. Herein, we present single-cell transcriptome profiling of metastatic lung adenocarcinoma, the most prevalent histological lung cancer type diagnosed at stage IV in over 40% of all cases. From 208,506 cells populating the normal tissues or early to metastatic stage cancer in 44 patients, we identify a cancer cell subtype deviating from the normal differentiation trajectory and dominating the metastatic stage. In all stages, the stromal and immune cell dynamics reveal ontological and functional changes that create a pro-tumoral and immunosuppressive microenvironment. Normal resident myeloid cell populations are gradually replaced with monocyte-derived macrophages and dendritic cells, along with T-cell exhaustion. This extensive single-cell analysis enhances our understanding of molecular and cellular dynamics in metastatic lung cancer and reveals potential diagnostic and therapeutic targets in cancer-microenvironment interactions.

Myung-Ju AhnSamsung Medical Center, Sungkyunkwan Universitysilk.ahn@samsung.com
Hae-Ock LeeSamsung Genome Institute, Samsung Medical Centerhaeocklee@catholic.ac.kr
Nayoung Kim1
Hong Kwan Kim2
Kyungjong Lee2
Yourae Hong1
Jong Ho Cho2
Jung Won Choi2
Jung-Il Lee2
Yeon-Lim Suh2
Bo Mi Ku3
Hye Hyeon Eum1
Soyean Choi1
Yoon-La Choi4
Je-Gun Joung1
Woong-Yang Park1
Hyun Ae Jung2
Jong-Mu Sun2
Se-Hoon Lee2
Jin Seok Ahn2
Keunchil Park2
Myung-Ju Ahn2
Hae-Ock Lee1
1Samsung Genome Institute, Samsung Medical Center
2Samsung Medical Center, Sungkyunkwan University
3Samsung Biomedical Research Institute, Samsung Medical Center, Sungkyunkwan University
4Samsung Advanced Institute for Health Sciences &Technology, Sungkyunkwan University
Ida Zucchi

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/087efc3c-2601-4de6-bbe9-0114593050d1

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.http://ureca-singlecell.kr
EGA Accessions:GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

MetastaticLUADReprogramming

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

4 anatomical entities

Organ Part

Unspecified

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

lung adenocarcinoma

Development Stage

human adult stage

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

processed_matrix_generation, raw_matrix_generation

File Format

3 file formats

Cell Count Estimate

208.5k

Donor Count

44
rds.gz2 file(s)txt.gz3 file(s)xlsx1 file(s)