HCA Data Explorer

Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal- Niche Interactions

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Updated September 30, 2021

Human fetal germ cells (FGCs) are precursors to sperm and eggs and are crucial for maintenance of the species. However, the developmental trajectories and heterogeneity of human FGCs remain largely unknown. Here, we performed single-cell RNA-seq analysis of over 2000 FGCs and their gonadal niche cells in female and male human embryos spanning several developmental stages. We found that the female FGCs undergo four distinct sequential phases characterized by mitosis, retinoic acid signaling, meiotic prophase, and oogenesis. Male FGCs develop through stages of migration, mitosis and cell cycle arrest. Individual embryos of both sexes simultaneously contain several subpopulations, highlighting the asynchronous and heterogeneous nature of FGC development. Moreover, we observed reciprocal signaling interactions between FGCs and their gonadal niche cells, including activation of BMP and Notch signaling pathways. Our work provides key insights into crucial features of human FGCs during their highly ordered mitotic, meiotic, and gametogenetic processes in vivo.

Ji DongPeking Universitydongji5211314@126.com
Ji Dong (Experimental Scientist)1
Parisa Nejad (Human Cell Atlas Wrangler)2
Beagan Nguy (Human Cell Atlas Wrangler Intern)2
1Peking University
2University of California, Santa Cruz
None

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/08b794a0-519c-4516-b184-c583746254c5

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86146/suppl/GSE86146_RAW.tar
INSDC Project Accessions:GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

HumanGermlineCells

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

gonad

Organ Part

germ layer

Selected Cell Types

germ cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

embryo stage

Library Construction Method

Smart-like

Nucleic Acid Source

single cell

Paired End

true

File Format

2 file formats

Cell Count Estimate

43

Donor Count

27
fastq.gz86 file(s)tar1 file(s)