HCA Data Explorer

Single cell profiling of human induced dendritic cells generated by direct reprogramming of embryonic fibroblasts

Access Granted
Updated January 31, 2024

Dendritic cells (DCs) are professional antigen-presenting cells specialized in the recognition, processing and presentation of antigens to T-cells, inducing adaptive immune responses. We have identified PU.1, IRF8 and BATF3 transcription factors (TFs) to reprogram human fibroblasts into DC type 1 (DC1). Induced DCs acquire a step-wise DC1 transcriptional signature at the single cell level as assessed with droplet based scRNA-seq. Hence, we provide evidence that antigen presentation can be dynamically programmed by a small combination of TFs in human cells. Moreover, it represents a platform for generating autologous DC1, the most attractive DC subset for cancer immunotherapy.

Filipe PereiraLund Universityfilipe.pereira@med.lu.se
Filipe Pereira (Principal Investigator)1
Fábio Rosa (Experimental Scientist)1
Cristiana Pires (Experimental Scientist)1
Ilia Kurochkin (Computational Scientist)2
1Lund University
2Skolkovo Institute of Science and Technology
Enrique Sapena Ventura

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/116965f3-f094-4769-9d28-ae675c1b569c
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INSDC Project Accessions:BioStudies Accessions:

Atlas

None

Analysis Portals

None

Project Label

Reprogrammed_Dendritic_Cells

Species

Homo sapiens

Sample Type

2 sample types

Anatomical Entity

embryo

Organ Part

skin epidermis

Selected Cell Types

2 cell types

Model Organ

immune system

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

Carnegie stage 18

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

File Format

4 file formats

Cell Count Estimate

6.3k

Donor Count

1
bam3 file(s)csv1 file(s)fastq.gz36 file(s)loom4 file(s)