HCA Data Explorer

Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution.

Access Granted
Updated September 30, 2021

The cardiac conduction system (CCS) consists of distinct components including the sinoatrial node (SAN), atrioventricular node (AVN), His bundle, bundle branches (BB) and Purkinje fibers (PF). Despite an essential role for the CCS in heart development and function, the CCS has remained challenging to interrogate due to inherent obstacles including small cell numbers, large cell type heterogeneity, complex anatomy and difficulty in isolation. We used single-cell RNA-sequencing (scRNA-seq) to perform genome-wide analysis of gene expression of the CCS at single-cell resolution. Overall design: Single cell transcriptional analysis of embryonic cardiac cells using 10x genomics 3' solution.

William R GoodyerStanford University School of Medicinewgoodyer@stanford.edu
Sean M WuStanford University School of Medicinesmwu@stanford.edu
William R Goodyer1
Benjamin M Beyersdorf1
David T Paik1
Lei Tian1
Guang Li1
Jan W Buikema1
Orlando Chirikian1
Shannon Choi1
Sneha Venkatraman1
Eliza L Adams2
Marc Tessier-Lavigne2
Joseph C Wu1
Sean M Wu (Principal Investigator)1
1Stanford University School of Medicine
2Stanford University
Ami E Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/2086eb05-10b9-432b-b7f0-169ccc49d270
None
GEO Series Accessions:INSDC Project Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

DevelopingCardiacSystem

Species

Mus musculus

Sample Type

specimens

Anatomical Entity

heart

Organ Part

7 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

Theiler stage 24

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

File Format

4 file formats

Cell Count Estimate

22.0k

Donor Count

6
bam4 file(s)fastq.gz24 file(s)loom5 file(s)tar1 file(s)