HCA Data Explorer

CITE-seq of in vitro control and memory-like human NK cells

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Updated August 30, 2022

Peripheral blood NK cells were cultured into either control or cytokine-induced memory-like NK cells as described in PMID: 32614951. After differentiation, cells were labeled with hashtag antibodies and cite-seq antibodies and control and memory-like NK cells were combined and loaded onto the 10x Genomics Chromium Instrument a the McDonnell Genome Institute at Washington University School of Medicine. The following samples were analyzed to develop a classification tool for unbiased identification of memory-like NK cells in a bulk single-cell RNA-seq population. Overall design: 1 sample: control and memory-like NK cell generated from the same normal donor are hashtagged into the same files

Amanda F CashenWashington University School of Medicineacashen@wustl.edu
Todd A FehnigerWashington University School of Medicinetfehnige@wustl.edu
Amanda F Cashen (Experimental Scientist)1
Todd A Fehniger (Experimental Scientist)1
1Washington University School of Medicine
Brittney D Wick
Parisa Nejad
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/2253ae59-4cc5-4bd2-b44e-ecb6d3fd7646
None
GEO Series Accessions:INSDC Project Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

humanMemoryLikeNKCellsCiteSeq

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

natural killer cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

CITE-seq

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

Unspecified

Donor Count

1
fastq.gz8 file(s)tar1 file(s)xlsx1 file(s)