HCA Data Explorer

Pseudotime Ordering of Single Human β-Cells Reveals States of Insulin Production and Unfolded Protein Response.

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Updated October 18, 2024

Proinsulin is a misfolding-prone protein, making its biosynthesis in the endoplasmic reticulum (ER) a stressful event. Pancreatic β-cells overcome ER stress by activating the unfolded protein response (UPR) and reducing insulin production. This suggests that β-cells transition between periods of high insulin biosynthesis and UPR-mediated recovery from cellular stress. We now report the pseudotime ordering of single β-cells from humans without diabetes detected by large-scale RNA sequencing. We identified major states with 1) low UPR and low insulin gene expression, 2) low UPR and high insulin gene expression, or 3) high UPR and low insulin gene expression. The latter state was enriched for proliferating cells. Stressed human β-cells do not dedifferentiate and show little propensity for apoptosis. These data suggest that human β-cells transition between states with high rates of biosynthesis to fulfill the body's insulin requirements to maintain normal blood glucose levels and UPR-mediated recovery from ER stress due to high insulin production.

Yurong XinRegeneron Pharmaceuticals, Tarrytown, NY.yurong.xin@regeneron.com
Jesper GromadaRegeneron Pharmaceuticals, Tarrytown, NY jesper.gromada@regeneron.com
Yurong Xin1
Giselle Dominguez Gutierrez1
Haruka Okamoto1
Jinrang Kim1
Ann-Hwee Lee1
Christina Adler1
Min Ni1
George D Yancopoulos1
Andrew J Murphy1
Jesper Gromada2
1Regeneron Pharmaceuticals, Tarrytown, NY.
2Regeneron Pharmaceuticals, Tarrytown, NY
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To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/27e2e0ae-5971-4927-aac1-19e81804097b
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GEO Series Accessions:

Atlas

PancreasPancreas v1.0

Analysis Portals

None

Project Label

pancreasNormalIslets

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

pancreas

Organ Part

islet of Langerhans

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

adult

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

6.2k

Donor Count

12
fastq.gz1,264 file(s)tar1 file(s)xlsx1 file(s)