HCA Data Explorer

HCA seed network precise tumor-nephrectomy samples

Access Granted
Updated December 1, 2022

The datasets contain single cell RNA sequencing data from the normal region of tumor-nephrectomy samples.

Markus Bitzer University of Michiganmarkusbi@med.umich.edu
Rajasree MenonUniversity of Michiganrajmenon@med.umich.edu
None
Matthias Kretzler1
Edgar Otto1
Christopher O’ Connor1
Markus Bitzer 1
Rajasree Menon1
1University of Michigan
None

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://cellxgene.cziscience.com/collections/a98b828a-622a-483a-80e0-15703678befd
None

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Atlas

None

Analysis Portals

CZ CELLxGENECZ CELLxGENE

Project Label

HCAseednetworkprecisetumor-nephrectomysamples

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

kidney

Organ Part

cortex of kidney

Selected Cell Types

Unspecified

Disease Status (Specimen)

Unspecified

Disease Status (Donor)

kidney cancer

Development Stage

14 development stages

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

File Format

fastq

Cell Count Estimate

345.5k

Donor Count

18
fastq48 file(s)