Direct exposure to SARS-CoV-2 and cigarette smoke increases infection severity and alters the stem cell-derived airway repair response

Access Granted
Updated February 14, 2025

To study the effect of cigarette smoke exposure on Sars-Cov2 infection, we directly exposed mucociliary air-liquid interface (ALI) cultures derived from primary human nonsmoker airway basal stem cells (ABSCs) to short term cigarette smoke and infected them with live SARS-CoV-2. We set out to examine the underlying mechanisms governing the increased susceptibility of cigarette smoke exposed ALI cultures to SARS-CoV-2 infection by usingle cell profiling of the cultures, which showed that interferon response genes were induced in SARS-CoV-2 infected airway epithelial cells in ALI cultures but smoking exposure together with SARS-CoV-2 infection reduced the interferon response.

Kathrin PlathUniversity of California, Los Angeles

Direct Exposure to SARS-CoV-2 and Cigarette Smoke Increases Infection Severity and Alters the Stem Cell-Derived Airway Repair Response

Kathrin Plath (Experimental Scientist)1
1University of California, Los Angeles
Parisa Nejad
William Sullivan
Schwartz Rachel

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/2a64db43-1b55-4639-aabb-8dba0145689d

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://cellxgene.cziscience.com/collections/cdfb9ead-cb58-4a53-879d-5e4ed5329e732.https://covid19-smoking.cells.ucsc.edu
GEO Series Accessions:

Atlas

None

Analysis Portals

CZ CELLxGENE
CZ CELLxGENE
Stem Cell Hub
Stem Cell Hub
UCSC Cell Browser
UCSC Cell Browser

Project Label

gompertsLungSarsCov2

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

lung

Organ Part

lung epithelium

Selected Cell Types

bronchioalveolar stem cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10x 3' v3 sequencing

Nucleic Acid Source

single cell

Paired End

false

File Format

5 file formats

Cell Count Estimate

19.4k

Donor Count

2
bam4 file(s)fastq.gz12 file(s)loom5 file(s)tar1 file(s)xlsx1 file(s)
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