Single-cell ATAC sequencing reveals the mechanism of human breast cancer metastasis
To obtain more information about the lymph node metastasis of breast cancer cells, we selected the matched positive lymph nodes (PL), and negative lymph nodes (NL) of the same patient to perform integrated analysis. The PL, NL samples were analysed with single-cell ATAC sequencing. Overall design: Single cell ATACseq was performed using the 10X Genomics platform per the manufacturers instructions.
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Atlas
Analysis Portals
NoneProject Label
scATACseqOfLymphNodeMetastasisSpecies
Homo sapiens
Sample Type
specimens
Anatomical Entity
immune organ
Organ Part
lymph node
Selected Cell Types
Unspecified
Disease Status (Specimen)
luminal B breast carcinoma
Disease Status (Donor)
luminal B breast carcinoma
Development Stage
human adult stage
Library Construction Method
10x scATAC-seq
Nucleic Acid Source
single nucleus
Paired End
falseAnalysis Protocol
analysis_protocol_1File Format
Cell Count Estimate
11.3kDonor Count
1