Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis

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Updated January 9, 2025

Women with germline BRCA1 mutations (BRCA1+/mut) have increased risk for hereditary breast cancer. Cancer initiation in BRCA1+/mut is associated with premalignant changes in breast epithelium; however, the role of the epithelium-associated stromal niche during BRCA1-driven tumor initiation remains unclear. Here we show that the premalignant stromal niche promotes epithelial proliferation and mutant BRCA1-driven tumorigenesis in trans. Using single-cell RNA sequencing analysis of human preneoplastic BRCA1+/mut and noncarrier breast tissues, we show distinct changes in epithelial homeostasis including increased proliferation and expansion of basal-luminal intermediate progenitor cells. Additionally, BRCA1+/mut stromal cells show increased expression of pro-proliferative paracrine signals. In particular, we identify pre-cancer-associated fibroblasts (pre-CAFs) that produce protumorigenic factors including matrix metalloproteinase 3 (MMP3), which promotes BRCA1-driven tumorigenesis in vivo. Together, our findings demonstrate that precancerous stroma in BRCA1+/mut may elevate breast cancer risk through the promotion of epithelial proliferation and an accumulation of luminal progenitor cells with altered differentiation.

Kai KessenbrockUniversity of Californiakai.kessenbrock@uci.edu
Kevin Nee1
Dennis Ma1
Quy H Nguyen1
Maren Pein1
Nicholas Pervolarakis1
Jacob Insua-Rodríguez1
Yanwen Gong1
Grace Hernandez1
Hamad Alshetaiwi2
Justice Williams1
Maha Rauf1
Kushal R Dave1
Keerti Boyapati1
Aliza Hasnain1
Christian Calderon1
Anush Markaryan1
Robert Edwards3
Erin Lin3
Ritesh Parajuli3
Peijie Zhou1
Qing Nie1
Sundus Shalabi4
Mark A LaBarge4
Kai Kessenbrock1
1University of California
2University of California; University of Hail
3University of California Irvine Medical Center
4Beckman Research Institute of City of Hope
Arsenios Chatzigeorgiou

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Atlas

BreastBreast v1.0

Analysis Portals

None

Project Label

PreneoplasticBreastNee10x

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

Breast

Organ Part

Unspecified

Selected Cell Types

2 cell types

Disease Status (Specimen)

normal

Disease Status (Donor)

12 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

3 file formats

Cell Count Estimate

230.1k

Donor Count

22
fastq.gz184 file(s)txt.gz22 file(s)xlsx2 file(s)