HCA Data Explorer

Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (scRNA-seq)

Access Granted
Updated September 30, 2021

Fatty tissue can expand in two ways: through increases in the size of individual adipocytes or through increases in the number of adipocytes. The former process promotes metabolic disease, and the latter protects against it. Merrick et al. used single-cell RNA sequencing to define the hierarchy of mesenchymal progenitor cells that give rise to adipose tissue in mice and humans. They found that progenitor cells expressing a protein called DPP4 give rise to two distinct types of preadipocytes in response to different signals. The DPP4 progenitors reside in a fluid-filled network of collagen and elastin fibers surrounding adipose tissue. In principle, therapeutic interventions that increase progenitor cell differentiation into adipocytes could ameliorate metabolic disease.

Patrick SealePerelman School of Medicine at the University of Pennsylvaniasealep@pennmedicine.upenn.edu
David Merrick1
Alexander Sakers1
Zhazira Irgebay1
Chihiro Okada1
Catherine Calvert1
Michael P Morley1
Ivona Percec1
Patrick Seale (Principal Investigator)1
1Perelman School of Medicine at the University of Pennsylvania
Ami Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/42d4f8d4-5422-4b78-adae-e7c3c2ef511c
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

HumanAdiposeTissue

Species

2 species

Sample Type

specimens

Anatomical Entity

adipose tissue

Organ Part

4 organ parts

Selected Cell Types

subcutaneous fat cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

3 development stages

Library Construction Method

10X 3' v2 sequencing

Nucleic Acid Source

single cell

Paired End

false

File Format

4 file formats

Cell Count Estimate

22.8k

Donor Count

3
bam3 file(s)fastq.gz24 file(s)loom5 file(s)tar1 file(s)