HCA Data Explorer

Refining Colorectal Cancer Classification and Clinical Stratification Through a Single-Cell Atlas

Access Granted
Updated September 16, 2022

To determine and dissect the extent of tumor, immunological, and stromal heterogeneity in CRC patients, we performed droplet-based scRNA-seq on 16 racially diverse, treatment naïve CRC patient tissue samples and seven adjacent normal colonic tissue samples (totaling 23 samples), yielded 49,589 single cells enabling high-resolution depiction of the cellular diversity and heterogeneity within the tumor and microenvironmental cells.

Ashiq MasoodIndiana Universityasmasood@iu.edu
Ashiq Masood (Principal Investigator)1
1Indiana University
William G Sullivan

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/4d9d56e4-610d-4748-b57d-f8315e3f53a3
None
GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

colorectalCancerAtlas

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

colon

Organ Part

8 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

colorectal cancer

Development Stage

human adult stage

Library Construction Method

10x 5' transcription profiling

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2, analysis_protocol_3

File Format

2 file formats

Cell Count Estimate

49.6k

Donor Count

16
csv.gz2 file(s)xlsx1 file(s)