Refining Colorectal Cancer Classification and Clinical Stratification Through a Single-Cell Atlas
To determine and dissect the extent of tumor, immunological, and stromal heterogeneity in CRC patients, we performed droplet-based scRNA-seq on 16 racially diverse, treatment naïve CRC patient tissue samples and seven adjacent normal colonic tissue samples (totaling 23 samples), yielded 49,589 single cells enabling high-resolution depiction of the cellular diversity and heterogeneity within the tumor and microenvironmental cells.
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Atlas
Analysis Portals
NoneProject Label
colorectalCancerAtlasSpecies
Homo sapiens
Sample Type
specimens
Anatomical Entity
colon
Organ Part
Selected Cell Types
Unspecified
Disease Status (Specimen)
Disease Status (Donor)
colorectal cancer
Development Stage
human adult stage
Library Construction Method
10x 5' transcription profiling
Nucleic Acid Source
single cell
Paired End
falseAnalysis Protocol
analysis_protocol_1, analysis_protocol_2, analysis_protocol_3File Format
Cell Count Estimate
49.6kDonor Count
16