HCA Data Explorer

Intratumoral heterogeneity in recurrent pediatric pilocytic astrocytomas

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Updated September 14, 2022

Cancer tumors are composed by a wide variety of cells with genetic and transcriptional alterations accumulated throughout tumor progression. This intra-tumoral heterogeneity provides adaptability of the tumor. Cell niches enriched with transcriptional signatures for cell renewal, adaptation and resistance to DNA damage induced by radiation (radiotherapy resistance) have been identified within some cancer tumors. Therefore, it seems that intra-tumoral heterogeneity imposes deep challenges to current therapeutic treatments. Tumors of the central nervous system are the most common solid tumors during childhood and are in the top-two causes of cancer-related death in children worldwide. Gliomas arise from glial precursor cells that are present in the brain and spinal cord and astrocytoma is the most commonly diagnosed type of glioma in children. Despite similar origin, astrocytomas behave differently depending on their location. Pilocytic astrocytoma that arise in cerebellum are more resilient and display a higher relapse degree after removal compared to those ones that arise in cerebrum. We will compare the transcritome of single nuclei from pediatric pilocytic astrocytoma from cerebellum in two time points (i.e., newly diagnosed vs relapse) plus healthy tissues. We predict that cells that produce tumor relapse will be present in both time points. Therefore, based on their transcriptional profiles, we will be able to identify them. This information will provide a deep knowledge about tumor relapse that can be extrapolated to other tumors and will offer RNA biomarkers for therapeutic purposes.

Abrahan Hernández-HernándezKarolinska Institutetabrahan.h.hernandez@gmail.com

NA

Abrahan Hernández-Hernández (Principal Investigator)1
Francisco J Arenas-Huertero (Principal Investigator)2
Adriana T Lopéz-Santaella (Experimental Scientist)2
Ulises Torres-Flores (Experimental Scientist)2
Diego Montesinos-Valencia (Experimental Scientist)2
Fernando Chico de Ponce León (Biomaterial Provider)2
Vicente González-Carranza (Biomaterial Provider)2
Samuel Torres-García (Biomaterial Provider)2
Rosa Rebollar-Vega (Experimental Scientist)3
1Karolinska Institutet
2Hospital Infantil de México Federico Gómez
3Red de Apoyo a la Investigación, Universidad Nacional Autónoma de México e Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán. México City, México
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/575c0ad9-c78e-469b-9fdf-9a68dd881137
None
None

Atlas

None

Analysis Portals

CZ CELLxGENECZ CELLxGENE

Project Label

PediatricAstrocytomas

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

brain

Organ Part

cerebellum

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

child stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single nucleus

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

4 file formats

Cell Count Estimate

40.0k

Donor Count

8
fastq.gz48 file(s)RData1 file(s)xlsx1 file(s)zip1 file(s)