A Single-cell Transcriptomic Atlas of Human Intervertebral Disc
Using high-precision transcriptomics to systematically map the atlas of human intervertebral disc (IVD) at single-cell resolution. Consequently, we found remarkable cellular diversity in the human IVD and identified a set of signature markers to recognize the cell types spatially. Furthermore, we deciphered a biological classification of chondrocyte subclusters with distinct role in the ECM homeostasis.Notably, the critical clues were also discovered for progenitor cells with bi-lineage differentiation trajectories in the nucleus pulposus, which discriminatively marked by the ancestry molecules PDGFRA and PROCR and highly enriched PDGF network. Finally, we uncovered the potential vital factors maintaining the IVD homeostasis from the intercellular crosstalk based on the signaling network landscape of the IVD microenvironment. Overall design: Single-cell sequencing of 91,295 IVD cells from 3 nucleus pulposus, 2 cartilage endplate and 2 annulus fibrosus in IVD using the 10X genomics Kit.
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Atlas
Analysis Portals
NoneProject Label
AtlasOfHumanIntervertebralDiscSpecies
Homo sapiens
Sample Type
specimens
Anatomical Entity
Organ Part
Selected Cell Types
Disease Status (Specimen)
normal
Disease Status (Donor)
normal
Development Stage
human adult stage
Library Construction Method
10x 3' V2 sequencing
Nucleic Acid Source
single cell
Paired End
falseAnalysis Protocol
analysis_protocol_1File Format
Cell Count Estimate
91.3kDonor Count
7