HCA Data Explorer

Single-cell RNA sequencing of human femoral head in vivo

Access Granted
Updated September 15, 2022

The homeostasis of bone metabolism depends on the coupling and precise regulation of various types of cells in bone tissue. However, the communication and interaction between bone tissue cells at the single-cell level remains poorly understood. Thus, we performed single-cell RNA sequencing (scRNA-seq) on the primary human femoral head tissue cells (FHTCs). Nine cell types were identified in 26,574 primary human (FHTCs), including granulocytes, T cells, monocytes, B cells, red blood cells, osteoblastic lineage cells, endothelial cells, endothelial progenitor cells (EPCs) and plasmacytoid dendritic cells. We identified serine protease 23 (PRSS23) and matrix remodeling associated protein 8 (MXRA8) as novel bone metabolism-related genes. Additionally, we found that several subtypes of monocytes, T cells and B cells were related to bone metabolism. Cell-cell communication analysis showed that collagen, chemokine, transforming growth factor and their ligands have significant roles in the crosstalks between FHTCs. In particular, EPCs communicated with osteoblastic lineage cells closely via the "COL2A1-ITGB1" pair. Collectively, this study provided an initial characterization of the cellular composition of the human FHTCs and the complex crosstalks between them at the single-cell level. It is a unique starting resource for in-depth insights into bone metabolism. Overall design: Applied scRNA-seq technology to characterize cellular heterogeneity at single-cell level in freshly isolated human femoral head tissue cells.

Xiang QiuCentral South Universityqiuxiang@csu.edu.cn
Xiang Qiu (Experimental Scientist)1
1Central South University
Parisa Nejad

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/68df3629-d2d2-4eed-b0ab-a10e0f019b88
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

femoralHeadScRnaSeq

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

bone tissue

Organ Part

head of femur

Selected Cell Types

bone cell

Disease Status (Specimen)

3 disease statuses

Disease Status (Donor)

3 disease statuses

Development Stage

human adult stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

26.6k

Donor Count

4
fastq.gz52 file(s)tar1 file(s)xlsx1 file(s)