HCA Data Explorer

CD27hiCD38hi plasmablasts are activated B cells of mixed origin with distinct function

Access Granted
Updated August 2, 2023

Clinically important broadly reactive B cells evolve during multiple infections, with B cells re-activated after secondary infection differing from B cells activated after a primary infection. Here we studied CD27highCD38high plasmablasts from patients with a primary or secondary dengue virus infection. Three transcriptionally and functionally distinct clusters were identified. The largest cluster 0/1 was plasma cell-related, with cells coding for serotype cross-reactive antibodies of the IgG1 isotype, consistent with memory B cell activation during an extrafollicular response. Cells in clusters 2 and 3 expressed low levels of antibody genes and high levels of genes associated with oxidative phosphorylation, EIF2 pathway, and mitochondrial dysfunction. Clusters 2 and 3 showed a transcriptional footprint of T cell help, in line with activation from naive B cells or memory B cells. Our results contribute to the understanding of the parallel B cell activation events that occur in humans after natural primary and secondary infection.

Raman SethiA*STARSethi_Raman@immunol.a-star.edu.sg
Raman Sethi (Computational Scientist)1
1A*STAR
William G Sullivan

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/74493e98-44fc-48b0-a58f-cc7e77268b59
None
EGA Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

distinctFunctionsOfPlasmablasts

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

plasmablast

Disease Status (Specimen)

dengue disease

Disease Status (Donor)

dengue disease

Development Stage

human adult stage

Library Construction Method

3 library construction methods

Nucleic Acid Source

single cell

Paired End

false, true

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

4 file formats

Cell Count Estimate

Unspecified

Donor Count

7
mtx.gz2 file(s)tsv.gz4 file(s)txt.gz2 file(s)xlsx1 file(s)