1.3 Million Brain Cells from E18 Mice

Access Granted
Updated October 20, 2021

Cortex, hippocampus, and subventricular zone were purchased from BrainBits (C57EHCV). They were from 2 E18 C57BL/6 mice dissected on the same day, shipped overnight on ice, and stored at 4C until being prepared for scRNA-Seq. Brain tissues were dissociated following the Demonstrated Protocol for Mouse Embryonic Neural Tissue (https://support.10xgenomics.com/single-cell/sample-prep/doc/demonstrated-protocol-dissociation-of-mouse-embryonic-neural-tissue-for-single-cell-rna-sequencing). 69 scRNA-Seq libraries were made from first mouse brain 2 days after the dissection. Another 64 scRNA-Seq libraries were made from second mouse brain 6 days after the dissection.

Jens Durruthy10x Genomics, Inc.jens.durruthy@10xgenomics.com
Jens Durruthy (Administrator)1
Elliott Meer (Experimental Scientist)1
Solongo Ziraldo (Experimental Scientist)1
Bruce Charles (Experimental Scientist)1
Qiang Gong (Computational Scientist)1
110x Genomics, Inc.
William G Sullivan

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/74b6d569-3b11-42ef-b6b1-a0454522b4a0

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.3.0/1M_neurons
GEO Series Accessions:
INSDC Project Accessions:
INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

1M Neurons

Species

Mus musculus

Sample Type

specimens

Anatomical Entity

brain

Organ Part

cortex

Selected Cell Types

neuron

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

mouse embryo stage

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

File Format

2 file formats

Cell Count Estimate

1.3M

Donor Count

2
fastq16,377 file(s)h51 file(s)
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