Transcriptomic Mapping of Human Parotid Gland at Single-Cell Resolution

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Updated January 20, 2025

As the largest salivary gland in oral cavity, the parotid gland plays an important role in initial digesting and lubricating food. The abnormal secretory function of the parotid gland can lead to dental caries and oral mucosal inflammation. In recent years, single-cell RNA sequencing (scRNA-seq) has been used to explore the heterogeneity and diversity of cells in various organs and tissues. However, the transcription profile of the human parotid gland at single-cell resolution has not been reported yet. In this study, we constructed the cell atlas of human parotid gland using the 10× Genomics platform. Characteristic gene analysis identified the biological functions of serous acinar cell populations in secreting digestive enzymes and antibacterial proteins. We revealed the specificity and similarity of the parotid gland compared to other digestive glands through comparative analyses of other published scRNA-seq data sets. We also identified the cell-specific expression of hub genes for Sjögren syndrome in the human parotid gland by integrating the results of genome-wide association studies and bulk RNA-seq, which highlighted the importance of immune cell dysfunction in parotid Sjögren syndrome pathogenesis.

J YiSichuan Universityjianruyi@scu.edu.cn
Z ZhaoSichuan Universityzhzhao@scu.edu.cn
M Chen (Co-Investigator)1
W Lin (Co-Investigator)1
J Gan1
W Lu1
M Wang1
X Wang1
J Yi1
Z Zhao1
1Sichuan University
Ida Zucchi

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/750b455a-e3cf-4721-9581-8609a6c9d561

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://github.com/miao-OvO/PG-scRNA-seq
GEO Series Accessions:
INSDC Project Accessions:
INSDC Study Accessions:

Atlas

Oral and CraniofacialORCF v1.0

Analysis Portals

None

Project Label

MappingParotidGland

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

parotid gland

Organ Part

Unspecified

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

oral cavity squamous cell carcinoma

Development Stage

human adult stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

3 file formats

Cell Count Estimate

16.1k

Donor Count

1
fq.gz8 file(s)txt.gz1 file(s)xlsx1 file(s)
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