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Human photoreceptor cells from different macular subregions have distinct transcriptional profiles

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Updated May 12, 2022

mRNA profiles for thousands of cells from foveal and parafoveal retina were generated from four human donor eyes (single-cell donors 5-8) using 10X Genomics Chromium single-cell system followed by sequencing on an Illumina NovaSeq.

Robert F Mullinsrobert-mullins@uiowa.edurobert-mullins@uiowa.edu
Robert F Mullins (Principal Investigator)1
1robert-mullins@uiowa.edu
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/8bd2e5f6-9453-4b9b-9c56-59e3a40dc87e
None
INSDC Project Accessions:
SRP310949
GEO Series Accessions:
GSE169047
INSDC Study Accessions:
PRJNA714963

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Atlas

None

Analysis Portals

None

Project Label

photoreceptorMacularSubregions

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

retina

Organ Part

2 organ parts

Selected Cell Types

photoreceptor cell

Disease Status (Specimen)

normal

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

10x 3' v1

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

2 file formats

Cell Count Estimate

34.5k

Donor Count

4
csv.gz16 file(s)fastq.gz128 file(s)