Exploring cellular changes in ruptured human quadriceps tendons at single-cell resolution

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Updated June 27, 2025

Tendon ruptures in humans have often been studied during the chronic phase of injury, particularly in the context of rotator cuff disease. However, the early response to acute tendon ruptures remains less investigated. Quadriceps tendons, which require prompt surgical treatment, offer a model to investigate this early response. Therefore, this study aimed to explore the early cellular changes in ruptured compared to healthy human quadriceps tendons. Quadriceps tendon samples were collected from patients undergoing fracture repair (healthy) or tendon repair surgery (collected 7–8 days post-injury). Nuclei were isolated for single-nucleus RNA sequencing, and comprehensive transcriptomic analysis was conducted. The transcriptomes of 12,808 nuclei (7268 from healthy and 5540 from ruptured quadriceps tendons) were profiled, revealing 12 major cell types and several cell subtypes and states. Rupture samples showed increased expression of genes related to extracellular matrix organisation and cell cycle signalling, and a decrease in expression of genes in lipid metabolism pathways. These changes were predominantly driven by gene expression changes in the fibroblast, vascular endothelial cell (VEC), mural cell, and macrophage populations: fibroblasts shift to an activated phenotype upon rupture and there is an increase in the proportion of capillary and dividing VECs. A diverse immune environment was observed, with a shift from homeostatic to activated macrophages following rupture. Cell–cell interactions increased in number and diversity in rupture, and primarily involved fibroblast and VEC populations. Collectively, this transcriptomic analysis suggests that fibroblasts and endothelial cells are key orchestrators of the early injury response within ruptured quadriceps tendon.

Sarah SnellingUniversity of Oxfordsarah.snelling@ndorms.ox.ac.uk
Jolet Y. MimpenUniversity of Oxfordjolet.mimpen@ndorms.ox.ac.uk
Claudia Paul1
Matthew J. Baldwin1
Lorenzo Ramos-Mucci1
Alina Kurjan1
Carla J. Cohen1
Shreeya Sharma1
Marie S. N. Chevalier Florquin2
Philippa Hulley1
John McMaster3
Andrew Titchener3
Alexander Martin3
Matthew L. Costa1
Stephen E. Gwilym1
Adam Cribbs1
Sarah Snelling1
Jolet Y. Mimpen1
1University of Oxford
2Leiden University Medical Center
3Oxford University Hospital NHS Foundation Trust
None

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/8dcbd84a-6243-4501-a684-0dcd084bb536

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://cellxgene.cziscience.com/collections/579203e2-182f-47bc-8230-7aa47247e2a42.https://github.com/Botnar-MSK-Atlas/quadriceps_tendon_atlas/
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Atlas

None

Analysis Portals

None

Project Label

Exploringcellularchangesinrupturedhumanquadricepst

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

tendon

Organ Part

tendon of quadriceps femoris

Selected Cell Types

Unspecified

Disease Status (Specimen)

injury

Disease Status (Donor)

injury

Development Stage

6 development stages

Library Construction Method

10x 3' v3

Nucleic Acid Source

single nucleus

Paired End

false

File Format

fastq

Cell Count Estimate

Unspecified

Donor Count

6
fastq14 file(s)
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