HCA Data Explorer

A human cell atlas of the pressure-induced hypertrophic heart

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Updated March 6, 2024

Pathological cardiac hypertrophy is a leading cause of heart failure, but knowledge of the full repertoire of cardiac cells and their gene expression profiles in the human hypertrophic heart is missing. Here, by using large-scale single-nucleus transcriptomics, we present the transcriptional response of human cardiomyocytes to pressure overload caused by aortic valve stenosis and describe major alterations in cardiac cellular crosstalk. Hypertrophied cardiomyocytes had reduced input from endothelial cells and fibroblasts. Genes encoding Eph receptor tyrosine kinases, particularly EPHB1, were significantly downregulated in cardiomyocytes of the hypertrophied heart. Consequently, EPHB1 activation by its ligand ephrin (EFN)B2, which is mainly expressed by endothelial cells, was reduced. EFNB2 inhibited cardiomyocyte hypertrophy in vitro, while silencing its expression in endothelial cells induced hypertrophy in co-cultured cardiomyocytes. Our human cell atlas of the hypertrophied heart highlights the importance of intercellular crosstalk in disease pathogenesis and provides a valuable resource.

Stefanie DimmelerGoethe University Frankfurt; German Center for Cardiovascular Research (DZHK)dimmeler@em.uni-frankfurt.de
Luka Nicin1
Sam Michael Schroeter1
Simone Franziska Glaser1
Ralf Schulze-Brüning2
Minh-Duc Pham2
Susanne S. Hille3
Michail Yekelchyk4
Badder Kattih1
Wesley Tyler Abplanalp1
Lukas Tombor1
Oliver J. Müller3
Thomas Braun5
Benjamin Meder6
Christoph Reich6
Mani Arsalan7
Tomas Holubec7
Thomas Walther8
Fabian Emrich7
Jaya Krishnan9
Andreas M. Zeiher1
David John1
Stefanie Dimmeler1
1Goethe University Frankfurt; German Center for Cardiovascular Research (DZHK)
2Goethe University Frankfurt
3University Hospital Schleswig-Holstein; German Center for Cardiovascular Research (DZHK)
4Goethe University Frankfurt; Max Planck Institute for Heart and Lung Research
5German Center for Cardiovascular Research (DZHK); Goethe University Frankfurt; Max Planck Institute for Heart and Lung Research
6Max Planck Institute for Heart and Lung Research; German Center for Cardiovascular Research (DZHK)
7Goethe University Hospital
8German Center for Cardiovascular Research (DZHK); Goethe University Frankfurt; Goethe University Hospital
9German Center for Cardiovascular Research (DZHK); Goethe University Frankfurt
Ida Zucchi

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/902dc043-7091-445c-9442-d72e163b9879

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://github.com/djhn75/DiseaseHeartCellAtlas
Array Express Accessions:

Atlas

None

Analysis Portals

None

Project Label

PressureInducedHypertrophicHeart

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

heart

Organ Part

interventricular septum muscular part

Selected Cell Types

Unspecified

Disease Status (Specimen)

aortic valve stenosis

Disease Status (Donor)

aortic valve stenosis

Development Stage

human adult stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single nucleus

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

2 file formats

Cell Count Estimate

88.5k

Donor Count

5
rds.gz1 file(s)xlsx1 file(s)