HCA Data Explorer

Single cell transcriptional zonation of human psoriasis skin identifies an alternative immunoregulatory axis conducted by skin resident cells

Access Granted
Updated October 18, 2023

Psoriasis is the most common skin disease in adults. Current experimental and clinical evidences suggested the infiltrating immune cells could target local skin cells and thus induce psoriatic phenotype. However, recent studies indicated the existence of a potential feedback signaling loop from local resident skin cells to infiltrating immune cells. Here, we deconstructed the full-thickness human skins of both healthy donors and patients with psoriasis vulgaris at single cell transcriptional level, and further built a neural-network classifier to evaluate the evolutional conservation of skin cell types between mouse and human. Last, we systematically evaluated the intrinsic and intercellular molecular alterations of each cell type between healthy and psoriatic skin. Cross-checking with psoriasis susceptibility gene loci, cell-type based differential expression, and ligand-receptor communication revealed that the resident psoriatic skin cells including mesenchymal and epidermis cell types, which specifically harbored the target genes of psoriasis susceptibility loci, intensively evoked the expression of major histocompatibility complex (MHC) genes, upregulated interferon (INF), tumor necrosis factor (TNF) signalling and increased cytokine gene expression for primarily aiming the neighboring dendritic cells in psoriasis. The comprehensive exploration and pathological observation of psoriasis patient biopsies proposed an uncovered immunoregulatory axis from skin local resident cells to immune cells, thus provided a novel insight for psoriasis treatment. In addition, we published a user-friendly website to exhibit the transcriptional change of each cell type between healthy and psoriatic human skin.

Yuzhen LiThe Second Affiliated Hospital of Harbin Medical Universitylyzdermatology@163.com
Yizhou HuKarolinska Institutetyizhou.hu@ki.se
Yuge Gao1
Xinyu Yao2
Yumeng Zhai1
Li Li1
Huini Li3
Xianqi Sun1
Pei Yu1
Tiankuo Xue1
Yuzhen Li1
Yizhou Hu4
1The Second Affiliated Hospital of Harbin Medical University
2Peking University First Hospital
3University of Helsinki, Institute of Biotechnology
4Karolinska Institutet
Ida Zucchi

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/91674dcf-8641-40e6-978d-c1706feffba8

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://yzstudio.one/skin-psoriasis-atlas
GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

SkinPsoriasisGao10x

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

skin of body

Organ Part

2 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

3 file formats

Cell Count Estimate

24.3k

Donor Count

6
loom.gz1 file(s)tab.gz1 file(s)xlsx1 file(s)