Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth

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Updated July 4, 2025

Understanding cell types and mechanisms of dental growth is essential for reconstruction and engineering of teeth. Therefore, we investigated cellular composition of growing and non-growing mouse and human teeth. As a result, we report an unappreciated cellular complexity of the continuously-growing mouse incisor, which suggests a coherent model of cell dynamics enabling unarrested growth. This model relies on spatially-restricted stem, progenitor and differentiated populations in the epithelial and mesenchymal compartments underlying the coordinated expansion of two major branches of pulpal cells and diverse epithelial subtypes. Further comparisons of human and mouse teeth yield both parallelisms and differences in tissue heterogeneity and highlight the specifics behind growing and non-growing modes. Despite being similar at a coarse level, mouse and human teeth reveal molecular differences and species-specific cell subtypes suggesting possible evolutionary divergence. Overall, here we provide an atlas of human and mouse teeth with a focus on growth and differentiation.

None
Jan Krivanek (Co-Investigator)1
Ruslan A Soldatov (Co-Investigator)2
Maria Eleni Kastriti3
Tatiana Chontorotzea4
Anna Nele Herdina5
Julian Petersen3
Bara Szarowska4
Marie Landova6
Veronika Kovar Matejova7
Lydie Izakovicova Holla7
Ulrike Kuchler4
Ivana Vidovic Zdrilic8
Anushree Vijaykumar8
Anamaria Balic9
Pauline Marangoni10
Ophir D Klein10
Vitor CM Neves11
Val Yianni11
Paul T Sharpe11
Tibor Harkany3
Brian D Metscher12
Marc Bajénoff13
Mina Mina8
Kaj Fried5
Peter V Kharchenko (Principal Investigator)2
Igor Adameyko (Principal Investigator)3
1Medical University of Vienna; Masaryk University
2Harvard Medical School
3Medical University of Vienna; Karolinska Institutet
4Medical University of Vienna
5Karolinska Institutet
6Institute of Animal Physiology and Genetics, CAS
7Masaryk University
8University of Connecticut Health Center
9University of Helsinki
10University of California
11King's College London
12University of Vienna
13Aix Marseille Université, INSERM
Arsenios Chatzigeorgiou

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Atlas

Oral and CraniofacialORCF v1.0

Analysis Portals

None

Project Label

DentalPulpKrivanek

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

2 anatomical entities

Organ Part

tooth root apical papilla

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

young adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

5 file formats

Cell Count Estimate

41.7k

Donor Count

7
fastq.gz36 file(s)rds1 file(s)txt3 file(s)txt.gz7 file(s)xlsx1 file(s)