A temporal cortex cell atlas highlights gene expression dynamics during human brain maturation

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Updated November 27, 2024

The human brain undergoes protracted postnatal maturation, guided by dynamic changes in gene expression. Most studies exploring these processes have used bulk tissue analyses, which mask cell-type-specific gene expression dynamics. Here, using single-nucleus RNA sequencing on temporal lobe tissue, including samples of African ancestry, we build a joint pediatric and adult atlas of 75 cell subtypes, which we verify with spatial transcriptomics. We explore the differences between pediatric and adult cell subtypes, revealing the genes and pathways that change during brain maturation. Our results highlight excitatory neuron subtypes, including the LTK and FREM subtypes, that show elevated expression of genes associated with cognition and synaptic plasticity in pediatric tissue. The resources we present here improve our understanding of the brain during its development and contribute to global efforts to build an inclusive brain cell map.

Dorit HockmanUniversity of Cape Towndorit.hockman@uct.ac.za
Christina Steyn1
Ruvimbo Mishi1
Stephanie Fillmore1
Matthijs B Verhoog1
Jessica More1
Ursula K Rohlwink1
Roger Melvill1
James Butler1
Johannes MN Enslin1
Muazzam Jacobs1
Tatjana Sauka-Spengler2
Maria Greco2
Sadi Quiñones3
Chris G Dulla3
Joseph V Raimondo1
Anthony Figaji1
Dorit Hockman (Principal Investigator)1
1University of Cape Town
2University of Oxford
3Tufts University School of Medicine
Arsenios Chatzigeorgiou

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/ae9f439b-bd47-4d6e-bd72-32dc70b35d97

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://zenodo.org/doi/10.5281/zenodo.13321264
None

Atlas

None

Analysis Portals

None

Project Label

PaedAdultTemporalCortex

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

brain

Organ Part

temporal lobe

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

9 disease statuses

Development Stage

3 development stages

Library Construction Method

2 library construction methods

Nucleic Acid Source

2 nucleic acid sources

Paired End

false

Analysis Protocol

Seurat, cell2location

File Format

5 file formats

Cell Count Estimate

144.4k

Donor Count

8
fastq.gz224 file(s)h5ad1 file(s)rds1 file(s)tiff4 file(s)xlsx1 file(s)
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