HCA Data Explorer

Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor.

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Updated August 30, 2022

Background: Despite in-depth knowledge of the molecular mechanisms controlling embryonic heart development, little is known about the signals governing postnatal maturation of the human heart. Methods: Single nucleus RNA-sequencing (snRNA-seq) of 54,140 nuclei from 9 human donors was used to profile transcriptional changes in diverse cardiac cell types during maturation from fetal stages to adulthood. Bulk RNA-sequencing and the assay for transposase-accessible chromatin using sequencing (ATAC-seq) were used to further validate transcriptional changes and to profile alterations in the chromatin accessibility landscape in purified cardiomyocyte nuclei from 21 human donors. Functional validation studies of sex steroids implicated in cardiac maturation were performed in human pluripotent stem cell-derived cardiac organoids and mice. Results: Our data identify the progesterone receptor as a key mediator of sex-dependent transcriptional programs during cardiomyocyte maturation. Functional validation studies in human cardiac organoids and mice demonstrate the progesterone receptor drives sex-specific metabolic programs and maturation of cardiac contractile properties. Conclusions: These data provide a blueprint for understanding human heart maturation in both sexes and reveal an important role for the progesterone receptor in human heart development.

Enzo R PorrelloMurdoch Children's Research Instituteenzo.porrello@mcri.edu.au
Choon Boon Sim1
Belinda Phipson2
Mark Ziemann3
Haloom Rafehi4
Richard J Mills5
Kevin I Watt6
Kwaku D Abu-Bonsrah7
Ravi K R Kalathur8
Holly K Voges9
Doan T Dinh10
Menno Ter Huurne8
Celine J Vivien8
Antony Kaspi4
Harikrishnan Kaipananickal4
Alejandro Hidalgo9
Lea M D Delbridge11
Rebecca L Robker10
Paul Gregorevic6
Cristobal G Dos Remedios12
Sean Lal13
Adam T Piers8
Igor E Konstantinov8
David A Elliott7
Assam El-Osta14
Alicia Oshlack2
James E Hudson15
Enzo R Porrello16
1Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; Melbourne Centre for Cardiovascular Genomics and Regenerative Medicine, The Royal Children's Hospital, Melbourne 3052, VIC, Australia.
2Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; Peter MacCallum Cancer Centre, The University of Melbourne, Melbourne 3000, VIC, Australia.
3Department of Diabetes, Central Clinical School, Alfred Centre, Monash University, Melbourne 3004, VIC, Australia; School of Life and Environmental Sciences, Deakin University, Waurn Ponds 3216, VIC, Australia; Baker Heart and Diabetes Institute, Melbourne 3004, VIC, Australia.
4Department of Diabetes, Central Clinical School, Alfred Centre, Monash University, Melbourne 3004, VIC, Australia; Baker Heart and Diabetes Institute, Melbourne 3004, VIC, Australia.
5QIMR Berghofer Medical Research Institute, Brisbane 4006, QLD, Australia.
6Baker Heart and Diabetes Institute, Melbourne 3004, VIC, Australia; Department of Anatomy and Physiology, School of Biomedical Sciences, The University of Melbourne, Melbourne 3052, VIC, Australia; Centre for Muscle Research, School of Biomedical Sciences, The University of Melbourne, Melbourne 3052, VIC, Australia.
7Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; 2 Melbourne Centre for Cardiovascular Genomics and Regenerative Medicine, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; Department of Paediatrics, The University of Melbourne, Melbourne 3052, VIC, Australia.
8Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; 2 Melbourne Centre for Cardiovascular Genomics and Regenerative Medicine, The Royal Children's Hospital, Melbourne 3052, VIC, Australia.
9Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; Department of Paediatrics, The University of Melbourne, Melbourne 3052, VIC, Australia.
10Robinson Research Institute, The University of Adelaide, Adelaide 5006, SA, Australia.
11Melbourne Centre for Cardiovascular Genomics and Regenerative Medicine, The Royal Children's Hospital, Melbourne 3052, VIC, Australia; Department of Anatomy and Physiology, School of Biomedical Sciences, The University of Melbourne, Melbourne 3052, VIC, Australia.
12School of Medical Sciences, The University of Sydney, Sydney 2050, NSW, Australia; Victor Chang Cardiac Research Institute, Darlinghurst, Sydney 2010, NSW, Australia.
13School of Medical Sciences, The University of Sydney, Sydney 2050, NSW, Australia.
14Department of Diabetes, Central Clinical School, Alfred Centre, Monash University, Melbourne 3004, VIC, Australia; Baker Heart and Diabetes Institute, Melbourne 3004, VIC, Australia; Hong Kong Institute of Diabetes and Obesity, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong, China; Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Hong Kong, China.
15QIMR Berghofer Medical Research Institute, Brisbane 4006, QLD, Australia; Centre for Cardiac and Vascular Biology, School of Biomedical Sciences, The University of Queensland, Brisbane 4072, QLD, Australia.
16Murdoch Children's Research Institute
Marion Shadbolt

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/bd400331-54b9-4fcc-bff6-6bb8b079ee1f

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://bphipson.github.io/Human_Development_snRNAseq/2.https://evangelynsim.github.io/Human_Development_ATACseq_bulk/3.https://evangelynsim.github.io/Human_Development_RNAseq_bulk/4.https://evangelynsim.github.io/Mouse_AA V_PGR_RNAseq_bulk/5.https://evangelynsim.github.io/Mouse_PRKO_RNAseq_bulk/
GEO Series Accessions:
GSE156702, GSE156703, GSE156704
INSDC Project Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

HumanHeartMaturationsnSeq

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

heart

Organ Part

heart left ventricle

Selected Cell Types

cardiac muscle cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

4 development stages

Library Construction Method

3 library construction methods

Nucleic Acid Source

2 nucleic acid sources

Paired End

false, true

Analysis Protocol

snSeq_analysis

File Format

3 file formats

Cell Count Estimate

54.1k

Donor Count

9
fastq.gz375 file(s)Rds3 file(s)xlsx1 file(s)