HCA Data Explorer

Identification of a unique subset of tissue-resident memory CD4+ T cells in Crohn’s disease

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Updated November 8, 2023

The impact of tissue-resident memory T cells (Trm) on the pathogenesis of inflammatory bowel disease remains controversial due to their heterogeneity. In particular, the pathological function of CD4+Trm, as opposed to their CD8+counterparts, is largely unknown. Here, using a comprehensive analytical approach, we found that CD103+CD4+Trm with an inflammatory phenotype were increased in the gut of Crohn’s disease (CD) patients but not in ulcerative colitis patients. Further profiling revealed that a subset of CD103+CD4+Trm, expressing CD161 and CCR5, were specific to CD patients and that this subset exerted cytotoxic activity. CD103+CD161+CCR5+CD4+Trm were predominant producers of proinflammatory cytokines, highlighting the importance of this specific subset in the pathogenesis of CD.

Kiyoshi TakedaDepartment of Microbiology and Immunology, Graduate School of Medicine, Osaka Universityktakeda@ongene.med.osaka-u.ac.jp
Kiyoshi Takeda (Experimental Scientist)1
Mari Murakami1
Takako Kihara2
Shigeto Seno3
Mitsuru Arase1
James Badger Wing4
Jonas Nørskov Søndergaard5
Ryuichi Kuwahara6
Tomohiro Minagawa6
Eri Oguro-Igashira1
Daisuke Motooka7
Daisuke Okuzaki 8
Ryota Mori9
Atsuyo Ikeda9
Yuki Sekido9
Takahiro Amano10
Hideki Iijima10
Keiichi Ozono11
Tsunekazu Mizushima9
Seiichi Hirota2
Hiroki Ikeuchi6
1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University
2Department of Surgical Pathology, Hyogo College of Medicine
3Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University
4Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan Center for Infectious Disease Education and Research, Osaka University
5Center for Infectious Disease Education and Research, Osaka University
6Department of Inflammatory Bowel Disease, Division of Surgery, Hyogo College of Medicine
7Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University
8Immunology Frontier Research Center, Osaka University
9Department of Gastroenterological Surgery, Graduate School of Medicine, Osaka University
10Department of Gastroenterology and Hepatology, Graduate School of Medicine, Osaka University
11Department of Pediatrics, Graduate School of Medicine, Osaka University
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/c844538b-8854-4a95-bd01-aacbaf86d97f
None
GEO Series Accessions:

Atlas

GutGut v1.0

Analysis Portals

None

Project Label

CD4TCellsInCrohnsDisease

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

2 anatomical entities

Organ Part

5 organ parts

Selected Cell Types

2 cell types

Disease Status (Specimen)

4 disease statuses

Disease Status (Donor)

3 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

4 file formats

Cell Count Estimate

25.2k

Donor Count

12
fasta.gz1 file(s)fastq.gz24 file(s)tar1 file(s)xlsx1 file(s)