HCA Data Explorer

Single-cell RNA-sequencing reveals the landscape of cervical cancer heterogeneity

Access Granted
Updated September 30, 2021

Cervical cancer (CC) is the forth leading cause of deaths in gynecological tumor. Although the etiology of CC has been extensively investigated, the exact pathogenesis of CC remains incomplete. Therefore, we applied single-cell RNA sequencing on cancer tissue and normal adjacent tissue from a patient with CC. Together, we identified four tumor cell subpopulations in tumor cells, which had specific signature genes with different biological functions and presented different prognosis. Among them, we identified a subset of cancer stem cell (CSCs), which was related to the developmental hierarchy of tumor progression. These data facilitate the understanding of the CC landscape and provides deeper insights into the development of prognostic biomarkers and therapeutic targets in the CC.

Chunbo LiFudan University, Shanghailichunbo142@126.com
Chunbo Li (Experimental Scientist)1
1Fudan University, Shanghai
Parisa Nejad
Rachel Schwartz
Brittney D Wick

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/d012d476-8f8c-4ff3-89d6-ebbe22c1b5c1
None
GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

CervicalCancerLandscape

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

uterus

Organ Part

uterine cervix

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

cervical cancer

Development Stage

human adult stage

Library Construction Method

10x 3' V2 sequencing

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

Unspecified

Donor Count

1
fastq.gz4 file(s)mtx.gz2 file(s)tsv.gz4 file(s)