HCA Data Explorer

Identification of neural oscillations and epileptiform changes in human brain organoids.

Access Granted
Updated October 18, 2024

Brain organoids represent a powerful tool for studying human neurological diseases, particularly those that affect brain growth and structure. However, many diseases manifest with clear evidence of physiological and network abnormality in the absence of anatomical changes, raising the question of whether organoids possess sufficient neural network complexity to model these conditions. Here, we explore the network-level functions of brain organoids using calcium sensor imaging and extracellular recording approaches that together reveal the existence of complex network dynamics reminiscent of intact brain preparations. We demonstrate highly abnormal and epileptiform-like activity in organoids derived from induced pluripotent stem cells from individuals with Rett syndrome, accompanied by transcriptomic differences revealed by single-cell analyses. We also rescue key physiological activities with an unconventional neuroregulatory drug, pifithrin-α. Together, these findings provide an essential foundation for the utilization of brain organoids to study intact and disordered human brain network formation and illustrate their utility in therapeutic discovery.

Bennett G NovitchDepartment of Neurobiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, USAbnovitch@ucla.edu
Ranmal A Samarasinghe1
Osvaldo A Miranda1
Jessie E Buth1
Simon Mitchell2
Isabella Ferando3
Momoko Watanabe1
Thomas F Allison4
Arinnae Kurdian1
Namie N Fotion1
Michael J Gandal5
Peyman Golshani3
Kathrin Plath4
William E Lowry4
Jack M Parent6
Istvan Mody3
Bennett G Novitch7
1Department of Neurobiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
2Institute for Quantitative and Computational Biosciences, Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA.
3Department of Neurology, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
4Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, Los Angeles, CA, USA.
5Intellectual Development and Disabilities Research Center, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
6Department of Neurology, University of Michigan Medical School, Ann Arbor, MI, USA.
7Department of Neurobiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/da77bd06-43ae-4012-a774-e4d62797df51
None
GEO Series Accessions:

Atlas

OrganoidOrganoid-Neural v1.0

Analysis Portals

None

Project Label

Cortex-MGE-fusion-organoids

Species

Homo sapiens

Sample Type

organoids

Anatomical Entity

zone of skin

Organ Part

Unspecified

Selected Cell Types

Unspecified

Model Organ

brain

Disease Status (Specimen)

Rett syndrome

Disease Status (Donor)

Rett syndrome

Development Stage

2 development stages

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

4 file formats

Cell Count Estimate

54.9k

Donor Count

2
csv.gz2 file(s)fastq.gz48 file(s)tar1 file(s)xlsx1 file(s)