HCA Data Explorer

Molecular and functional heterogeneity of IL-10-producing CD4+ T cells.

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Updated July 19, 2022

IL-10 is a prototypical anti-inflammatory cytokine, which is fundamental to the maintenance of immune homeostasis, especially in the intestine. There is an assumption that cells producing IL-10 have an immunoregulatory function. However, here we report that IL-10-producing CD4+ T cells are phenotypically and functionally heterogeneous. By combining single cell transcriptome and functional analyses, we identified a subpopulation of IL-10-producing Foxp3Neg CD4+ T cells that displays regulatory activity unlike other IL-10-producing CD4+ T cells, which are unexpectedly pro-inflammatory. We also found that patients with Inflammatory Bowel Disease (IBD), demonstrate a deficiency in this specific regulatory T-cell subpopulation. scRNA-seq analysis was performed on IL-10-producing CD4+ T cells isolated from the blood (PBMCs) of two healthy donors.

Nicola GaglianiDepartment of Medicine, University Medical Center Hamburg-Eppendorfn.gagliani@uke.de
Samuel HuberDepartment of Medicine, University Medical Center Hamburg-Eppendorfshuber@uke.de
Leonie Brockmann1
Shiwa Soukou1
Babett Steglich1
Paulo Czarnewski2
Lilan Zhao3
Sandra Wende1
Tanja Bedke1
Can Ergen1
Carolin Manthey1
Theodora Agalioti3
Maria Geffken4
Oliver Seiz1
Sara M Parigi2
Chiara Sorini2
Jens Geginat5
Keishi Fujio6
Thomas Jacobs7
Thomas Roesch8
Jacob R Izbicki3
Ansgar W Lohse1
Richard A Flavell9
Christian Krebs1
Jan-Ake Gustafsson10
Per Antonson10
Maria Grazia Roncarolo11
Eduardo J Villablanca2
Nicola Gagliani1
Samuel Huber1
1Department of Medicine, University Medical Center Hamburg-Eppendorf
2Immunology and Allergy Unit, Department of Medicine, Solna, Karolinska Institute and University Hospital
3Department of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf
4Institute of Transfusion Medicine, University Medical Center Hamburg-Eppendorf
5INGM-National Institute of Molecular Genetics "Romeo ed Enrica Invernizzi"
6Department of Allergy and Rheumatology, Graduate School of Medicine, The University of Tokyo
7Department of Immunology, Bernhard-Nocht-Institute of Tropical Medicine
8Department for Interdisciplinary Endoscopy, University Medical Center Hamburg-Eppendorf
9Department of Immunobiology, School of Medicine, Yale University
10Department of Biosciences and Nutrition, Karolinska Institutet
11Division of Stem Cell Transplantation and Regenerative Medicine, Department of Pediatrics, ISCBRM, Stanford School of Medicine
Ami Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/df88f39f-01a8-4b5b-92f4-3177d6c0f242
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

HeterogeneityCD4TCells

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

T cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol

File Format

tar

Cell Count Estimate

4.4k

Donor Count

2
tar1 file(s)