B cell signatures and tertiary lymphoid structures contribute to outcome in head and neck squamous cell carcinoma

Access Granted
Updated July 28, 2025

Current immunotherapy paradigms aim to reinvigorate CD8+ T cells, but the contribution of humoral immunity to antitumor immunity remains understudied. Here, we demonstrate that in head and neck squamous cell carcinoma (HNSCC) caused by human papillomavirus infection (HPV+), patients have transcriptional signatures of germinal center (GC) tumor infiltrating B cells (TIL-Bs) and spatial organization of immune cells consistent with tertiary lymphoid structures (TLS) with GCs, both of which correlate with favorable outcome. GC TIL-Bs in HPV+ HNSCC are characterized by distinct waves of gene expression consistent with dark zone, light zone and a transitional state of GC B cells. Semaphorin 4a expression is enhanced on GC TIL-Bs present in TLS of HPV+ HNSCC and during the differentiation of TIL-Bs. Our study suggests that therapeutics to enhance TIL-B responses in HNSCC should be prioritized in future studies to determine if they can complement current T cell mediated immunotherapies.

Tullia C BrunoUniversity of Pittsburghtbruno@pitt.edu
Ayana T Ruffin1
Anthony R Cillo1
Tracy Tabib1
Angen Liu1
Sayali Onkar1
Sheryl R Kunning1
Caleb Lampenfeld1
Huda I Atiya2
Irina Abecassis1
Cornelius HL Kürten3
Zengbiao Qi1
Ryan Soose1
Umamaheswar Duvvuri2
Seungwon Kim1
Steffi Oesterrich2
Robert Lafyatis1
Lan G Coffman2
Robert L Ferris1
Dario AA Vignali1
Tullia C Bruno1
1University of Pittsburgh
2Hillman Cancer Center
3University Duisburg-Essen
Ida Zucchi

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/e5ef5c5f-b856-47d1-b643-62c265528060
None
GEO Series Accessions:
INSDC Project Accessions:
INSDC Study Accessions:

Atlas

Oral and CraniofacialORCF v1.0

Analysis Portals

None

Project Label

BSignatureHNSCCRuffin10x

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

8 anatomical entities

Organ Part

5 organ parts

Selected Cell Types

8 cell types

Disease Status (Specimen)

3 disease statuses

Disease Status (Donor)

3 disease statuses

Development Stage

human adult stage

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

4 file formats

Cell Count Estimate

47.1k

Donor Count

37
fastq.gz126 file(s)mtx.gz63 file(s)tsv.gz126 file(s)xlsx1 file(s)
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