Activation of CD8+ T Cells in Chronic Obstructive Pulmonary Disease Lung

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Updated October 18, 2024

Rationale: Despite the importance of inflammation in chronic obstructive pulmonary disease (COPD), the immune cell landscape in the lung tissue of patients with mild-moderate disease has not been well characterized at the single-cell and molecular level. Objectives: To define the immune cell landscape in lung tissue from patients with mild-moderate COPD at single-cell resolution. Methods: We performed single-cell transcriptomic, proteomic, and T-cell receptor repertoire analyses on lung tissue from patients with mild-moderate COPD (n = 5, Global Initiative for Chronic Obstructive Lung Disease I or II), emphysema without airflow obstruction (n = 5), end-stage COPD (n = 2), control (n = 6), or donors (n = 4). We validated in an independent patient cohort (N = 929) and integrated with the Hhip+/- murine model of COPD. Measurements and Main Results: Mild-moderate COPD lungs have increased abundance of two CD8+ T cell subpopulations: cytotoxic KLRG1+TIGIT+CX3CR1+ TEMRA (T effector memory CD45RA+) cells, and DNAM-1+CCR5+ T resident memory (TRM) cells. These CD8+ T cells interact with myeloid and alveolar type II cells via IFNG and have hyperexpanded T-cell receptor clonotypes. In an independent cohort, the CD8+KLRG1+ TEMRA cells are increased in mild-moderate COPD lung compared with control or end-stage COPD lung. Human CD8+KLRG1+ TEMRA cells are similar to CD8+ T cells driving inflammation in an aging-related murine model of COPD. Conclusions: CD8+ TEMRA cells are increased in mild-moderate COPD lung and may contribute to inflammation that precedes severe disease. Further study of these CD8+ T cells may have therapeutic implications for preventing severe COPD.

Edy Y KimBrigham and Women's Hospital; Harvard Medical Schoolekim11@bwh.harvard.edu
Ana B Villaseñor-Altamirano1
Dhawal Jain2
Yunju Jeong1
Jaivardhan A Menon3
Mari Kamiya1
Hibah Haider3
Reshmi Manandhar3
Muhammad Dawood Amir Sheikh3
Humra Athar4
Louis T Merriam1
Min Hyung Ryu1
Takanori Sasaki1
Peter J Castaldi1
Deepak A Rao1
Lynette M Sholl1
Marina Vivero1
Craig P Hersh1
Xiaobo Zhou1
Justus Veerkamp5
Jeong H Yun1
Edy Y Kim1
MGB-Bayer Pulmonary Drug Discovery Lab6
1Brigham and Women's Hospital; Harvard Medical School
2Bayer US LLC
3Brigham and Women's Hospital
4Brigham and Women's Hospital; Bayer US LLC
5Bayer AG
6MGB-Bayer Pulmonary Drug Discovery Lab
Arsenios Chatzigeorgiou

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/e870ab56-3537-4b6d-a66f-534fbf8cc57f

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://zenodo.org/records/8393742
None

Atlas

LungLung v2.0

Analysis Portals

None

Project Label

CD8ActivationCOPDVillasenor

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

lung

Organ Part

Unspecified

Selected Cell Types

Unspecified

Disease Status (Specimen)

5 disease statuses

Disease Status (Donor)

6 disease statuses

Development Stage

human adult stage

Library Construction Method

10x 5' v2

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

2 file formats

Cell Count Estimate

109.4k

Donor Count

24
RDS1 file(s)xlsx1 file(s)
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