HCA Data Explorer

Single-cell RNA-seq of human peripheral blood NKT cells

Access Granted
Updated November 11, 2021

NKT cells are potent immune regulators and skew immune responses toward either inflammation or tolerance through quickly secreting either T helper (Th)1-, Th2-, Th17- or regulatory T-associated cytokines upon activation. Although the thymic development and functional differentiation of NKT cells is well defined in mice, it has not yet been studied in detail in humans. Overall design: We performed single-cell RNA-sequencing (scRNA-seq) of unstimulated and PMA/ionomycin-stimulated NKT cells from human peripheral blood mononuclear cells (PBMCs).

Indra AdriantoHenry Ford Health Systemiadrian1@hfhs.org
Li Zhou1
Indra Adrianto1
Jie Wang1
Xiaojun Wu1
Indrani Datta1
Qing-Sheng Mi1
1Henry Ford Health System
Enrique Sapena Ventura

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/f48e7c39-cc67-4055-9d79-bc437892840c
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INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

nktpbmcZhou

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

natural killer cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10X 3' v2 sequencing

Nucleic Acid Source

single cell

Paired End

false

File Format

4 file formats

Cell Count Estimate

14.1k

Donor Count

3
bam6 file(s)fastq.gz18 file(s)loom7 file(s)tar1 file(s)