A single-cell atlas of human and mouse white adipose tissue

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Updated March 6, 2025

White adipose tissue, once regarded as morphologically and functionally bland, is now recognized to be dynamic, plastic and heterogenous, and is involved in a wide array of biological processes including energy homeostasis, glucose and lipid handling, blood pressure control and host defence. High-fat feeding and other metabolic stressors cause marked changes in adipose morphology, physiology and cellular composition, and alterations in adiposity are associated with insulin resistance, dyslipidemia and type 2 diabetes. Here we provide detailed cellular atlases of human and mouse subcutaneous and visceral white fat at single-cell resolution across a range of body weight. We identify subpopulations of adipocytes, adipose stem and progenitor cells, vascular and immune cells and demonstrate commonalities and differences across species and dietary conditions. We link specific cell types to increased risk of metabolic disease and provide an initial blueprint for a comprehensive set of interactions between individual cell types in the adipose niche in leanness and obesity. These data comprise an extensive resource for the exploration of genes, traits and cell types in the function of white adipose tissue across species, depots and nutritional conditions.

Evan D RosenBeth Israel Deaconess Medical Center; Broad Institute of MIT and Harvard; Harvard Medical Schoolerosen@bidmc.harvard.edu
Margo P Emont1
Christopher Jacobs1
Adam L Essene2
Deepti Pant2
Danielle Tenen1
Georgia Colleluori3
Angelica D Vincenzo3
Anja M Jørgensen4
Hesam Dashti5
Adam Stefek5
Elizabeth McGonagle5
Sophie Strobel5
Samantha Laber5
Saaket Agrawal6
Gregory P Westcott2
Amrita Kar1
Molly L Veregge2
Anton Gulko2
Harini Srinivasan1
Zachary Kramer2
Eleanna D Filippis7
Erin Merkel2
Jennifer Ducie2
Christopher G Boyd2
William Gourash8
Anita Courcoulas8
Samuel J Lin2
Bernard T Lee2
Donald Morris2
Adam Tobias2
Amit V Khera9
Melina Claussnitzer6
Tune H Pers4
Antonio Giordano3
Orr Ashenberg5
Aviv Regev10
Linus T Tsai11
Evan D Rosen11
1Beth Israel Deaconess Medical Center; Broad Institute of MIT and Harvard
2Beth Israel Deaconess Medical Center
3Marche Polytechnic University
4University of Copenhagen
5Broad Institute of MIT and Harvard
6Broad Institute of MIT and Harvard; Massachusetts General Hospital
7Mayo Clinic Scottsdale
8University of Pittsburgh Medical Center
9Broad Institute of MIT and Harvard; Massachusetts General Hospital; Beth Israel Deaconess Medical Center
10Broad Institute of MIT and Harvard; Howard Hughes Medical Institute, Koch Institute of Integrative Cancer Research, Department of Biology; Genentech
11Beth Israel Deaconess Medical Center; Broad Institute of MIT and Harvard; Harvard Medical School
Arsenios Chatzigeorgiou

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/fc2a0b4e-1e4a-447b-a097-47b398402f37

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://singlecell.broadinstitute.org/single_cell/study/SCP1376/a-single-cell-atlas-of-human-and-mouse-white-adipose-tissue
INSDC Project Accessions:
GEO Series Accessions:
GSE176067, GSE176171
INSDC Study Accessions:

Atlas

AdiposeAdipose v1.0

Analysis Portals

None

Project Label

HumanMouseWhiteAdipose

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

Adipose tissue

Organ Part

3 organ parts

Selected Cell Types

Stromal cell

Disease Status (Specimen)

normal

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

2 nucleic acid sources

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

4 file formats

Cell Count Estimate

166.1k

Donor Count

22
mtx.gz4 file(s)tsv8 file(s)tsv.gz68 file(s)xlsx1 file(s)
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